Diagnostic Medicine
The Elephant in the Room: Towards A Reliable Time-Series Anomaly Detection Benchmark
Time-series anomaly detection is a fundamental task across scientific fields and industries. However, the field has long faced the "elephant in the room:" critical issues including flawed datasets, biased evaluation measures, and inconsistent benchmarking practices that have remained largely ignored and unaddressed. We introduce the TSB-AD to systematically tackle these issues in the following three aspects: (i) Dataset Integrity: with 1070 high-quality time series from a diverse collection of 40 datasets (doubling the size of the largest collection and four times the number of existing curated datasets), we provide the first large-scale, heterogeneous, meticulously curated dataset that combines the effort of human perception and model interpretation; (ii) Measure Reliability: by revealing issues and biases in evaluation measures, we identify the most reliable and accurate measure, namely, VUS-PR for anomaly detection in time series to address concerns from the community; and (iii) Comprehensive Benchmarking: with a broad spectrum of 40 detection algorithms, from statistical methods to the latest foundation models, we perform a comprehensive evaluation that includes a thorough hyperparameter tuning and a unified setup for a fair and reproducible comparison. Our findings challenge the conventional wisdom regarding the superiority of advanced neural network architectures, revealing that simpler architectures and statistical methods often yield better performance. The promising performance of neural networks on multivariate cases and foundation models on point anomalies highlights the need for further advancements in these methods.
Deep Active Learning with a Neural Architecture Search
We consider active learning of deep neural networks. Most active learning works in this context have focused on studying effective querying mechanisms and assumed that an appropriate network architecture is a priori known for the problem at hand. We challenge this assumption and propose a novel active strategy whereby the learning algorithm searches for effective architectures on the fly, while actively learning. We apply our strategy using three known querying techniques (softmax response, MC-dropout, and coresets) and show that the proposed approach overwhelmingly outperforms active learning using fixed architectures.
FAST: A Dual-tier Few-Shot Learning Paradigm for Whole Slide Image Classification
The expensive fine-grained annotation and data scarcity have become the primary obstacles for the widespread adoption of deep learning-based Whole Slide Images (WSI) classification algorithms in clinical practice. Unlike few-shot learning methods in natural images that can leverage the labels of each image, existing few-shot WSI classification methods only utilize a small number of fine-grained labels or weakly supervised slide labels for training in order to avoid expensive fine-grained annotation. They lack sufficient mining of available WSIs, severely limiting WSI classification performance. To address the above issues, we propose a novel and efficient dual-tier few-shot learning paradigm for WSI classification, named FAST. FAST consists of a dual-level annotation strategy and a dual-branch classification framework.
Disentangled Representation Learning in Non-Markovian Causal Systems and Yushu Pan
Considering various data modalities, such as images, videos, and text, humans perform causal reasoning using high-level causal variables, as opposed to operating at the low, pixel level from which the data comes. In practice, most causal reasoning methods assume that the data is described as granular as the underlying causal generative factors, which is often violated in various AI tasks. This mismatch translates into a lack of guarantees in various tasks such as generative modeling, decision-making, fairness, and generalizability, to cite a few. In this paper, we acknowledge this issue and study the problem of causal disentangled representation learning from a combination of data gathered from various heterogeneous domains and assumptions in the form of a latent causal graph. To the best of our knowledge, the proposed work is the first to consider i) non-Markovian causal settings, where there may be unobserved confounding, ii) arbitrary distributions that arise from multiple domains, and iii) a relaxed version of disentanglement. Specifically, we introduce graphical criteria that allow for disentanglement under various conditions. Building on these results, we develop an algorithm that returns a causal disentanglement map, highlighting which latent variables can be disentangled given the combination of data and assumptions. The theory is corroborated by experiments.
Graph-based Unsupervised Disentangled Representation Learning via Multimodal Large Language Models Yunnan Wang
Disentangled representation learning (DRL) aims to identify and decompose underlying factors behind observations, thus facilitating data perception and generation. However, current DRL approaches often rely on the unrealistic assumption that semantic factors are statistically independent. In reality, these factors may exhibit correlations, which off-the-shelf solutions have yet to properly address. To tackle this challenge, we introduce a bidirectional weighted graph-based framework, to learn factorized attributes and their interrelations within complex data. Specifically, we propose a ฮฒ-VAE based module to extract factors as the initial nodes of the graph, and leverage the multimodal large language model (MLLM) to discover and rank latent correlations, thereby updating the weighted edges. By integrating these complementary modules, our model successfully achieves fine-grained, practical and unsupervised disentanglement. Experiments demonstrate our method's superior performance in disentanglement and reconstruction. Furthermore, the model inherits enhanced interpretability and generalizability from MLLMs.
Explanations that reveal all through the definition of encoding
Feature attributions attempt to highlight what inputs drive predictive power. Good attributions or explanations are thus those that produce inputs that retain this predictive power; accordingly, evaluations of explanations score their quality of prediction. However, evaluations produce scores better than what appears possible from the values in the explanation for a class of explanations, called encoding explanations. Probing for encoding remains a challenge because there is no general characterization of what gives the extra predictive power. We develop a definition of encoding that identifies this extra predictive power via conditional dependence and show that the definition fits existing examples of encoding. This definition implies, in contrast to encoding explanations, that non-encoding explanations contain all the informative inputs used to produce the explanation, giving them a "what you see is what you get" property, which makes them transparent and simple to use.
NeurIPS_Rep_Select_Camera_Ready
T1 and T2 images for axial, sagittal, and coronal directions are summarized in the figures. SE stands for standard errors. Vote-MI representative slice selection method outperforms all other slice selection methods (including Random, K-center, Uncertainty, and Core-set) for all selection budgets. Table 10: In-context learning results with Random-selected, K-center, Uncertainty, Core-set, and Vote-MI representative selection methods on the BrainMD dataset, with a selection budget of 2, 4, or 8. Across the board, representative selection with Vote-MI substantially outperforms the randomly selected baseline for few-shot learning.
Enhancing vision-language models for medical imaging: bridging the 3D gap with innovative slice selection
Recent approaches to vision-language tasks are built on the remarkable capabilities of large vision-language models (VLMs). These models excel in zero-shot and few-shot learning, enabling them to learn new tasks without parameter updates. However, their primary challenge lies in their design, which primarily accommodates 2D input, thus limiting their effectiveness for medical images, particularly radiological images like MRI and CT, which are typically 3D. To bridge the gap between state-of-the-art 2D VLMs and 3D medical image data, we developed an innovative, one-pass, unsupervised representative slice selection method called Vote-MI, which selects representative 2D slices from 3D medical imaging. To evaluate the effectiveness of Vote-MI when implemented with VLMs, we introduce BrainMD, a robust, multimodal dataset comprising 2,453 annotated 3D MRI brain scans with corresponding textual radiology reports and electronic health records.
Flex-MoE: Modeling Arbitrary Modality Combination via the Flexible Mixture-of-Experts
Multimodal learning has gained increasing importance across various fields, offering the ability to integrate data from diverse sources such as images, text, and personalized records, which are frequently observed in medical domains. However, in scenarios where some modalities are missing, many existing frameworks struggle to accommodate arbitrary modality combinations, often relying heavily on a single modality or complete data. This oversight of potential modality combinations limits their applicability in real-world situations. To address this challenge, we propose Flex-MoE (Flexible Mixture-of-Experts), a new framework designed to flexibly incorporate arbitrary modality combinations while maintaining robustness to missing data. The core idea of Flex-MoE is to first address missing modalities using a new missing modality bank that integrates observed modality combinations with the corresponding missing ones.